FastQCFastQC Report
Wed 8 May 2024
EGAF00007963102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408336
Total Bases17.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC15340.37567101602601777No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG12580.30807962070451783No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC12550.3073449316249363No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11900.29142666823400337No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10870.2662023431683711No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG10560.25861055601269545No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG8540.209141491320873No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG7080.17338662278123898No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6610.16187649386779515No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6390.156488773950864No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6280.15379491399239842No Hit
GTCCAGCAGGTCGCGGTCGTTGTAGACACGTGGGGTATCAGTAT6130.15012146859449083No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG5940.1454684377571412No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT5870.14375416323811763No Hit
GTCCAGCAGATCGCGATCGTTGTAGACACGCGGGGTGTCGGTGT5780.14155009599937307No Hit
GACTGCAGAGCTCGCCTGACCGTGGCCGGTACCGCTGTGGCGGG5630.13787665060146548No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5520.1351827906429999No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5080.12440735080913756No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT4980.1219583872105325No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4800.11755025273304338No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG4650.11387680733513576No Hit
CTGGTGATGGCTGCCATGACGCTCGCCCGCGCTGCTACGTGCCT4460.10922377649778614No Hit
CGCACCTGCGCCAGCCGGTACGTTAACACCCGCGCCGAAGGTCA4450.10897888013792563No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG4220.10334626386113398No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT4120.1008973002625289No Hit

[OK]Adapter Content

Adapter graph