FastQCFastQC Report
Wed 8 May 2024
EGAF00007963103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408336
Total Bases12.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54951.3457054974334863No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA16020.3923239684965323No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG13600.3330590494102896No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG13230.32399788409545077No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG12690.31077348066298344No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12480.3056306571059128No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11060.27085537400572074No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT10540.2581207632929744No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG9420.23069237098859763No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC6560.1606520120684926No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6440.15771325575016654No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6340.15526429215156146No Hit
GCCGAAGTGCTGGCCCAAGTTGTTAAATCTC6170.15110105403393284No Hit
GGCACTCGTCACACCCAGAACTCCTCTAGCG6160.15085615767407234No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6140.1503663649543513No Hit
CCGCTGGATATTGACACCGCGTCTGAATCCG5980.1464480231965832No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5980.1464480231965832No Hit
GCGCGTGCCGCTCACCCGCCGACTAGCATGC5710.13983582148034954No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5010.12269307629011403No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5000.1224481799302535No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA4950.12122369813095098No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4910.12024411269150896No Hit
TCTGGTGACGAAGATAGCGACTCCTCCGATG4630.11338701461541476No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA4290.10506053838015753No Hit
CCGGGTAGCCACCACGAAGATCGTGCCGGTC4220.10334626386113398No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4110.1006524039026684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)