FastQCFastQC Report
Wed 8 May 2024
EGAF00007963104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431347
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC17060.39550524287870326No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC14270.3308241392660665No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG12840.2976721757656829No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12630.2928037056012908No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11970.2775027993703445No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG11410.26452021226529915No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG9100.21096704045698708No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG7670.17781507695660337No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7450.17271477487962128No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7350.1703964557537203No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG6690.155095549522774No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6570.15231356657169284No Hit
GACTGCAGAGCTCGCCTGACCGTGGCCGGTACCGCTGTGGCGGG6460.14976341553320183No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC6350.14721326449471075No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT6220.1441994496310395No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT6140.14234479433031874No Hit
GTCCAGCAGGTCGCGGTCGTTGTAGACACGTGGGGTATCAGTAT6060.14049013902959798No Hit
GTCCAGCAGATCGCGATCGTTGTAGACACGCGGGGTGTCGGTGT5840.13538983695261586No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT5470.12681205618678232No Hit
CGCACCTGCGCCAGCCGGTACGTTAACACCCGCGCCGAAGGTCA5300.1228709136727507No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG5240.12147992219721014No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5190.12032076263425964No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG4960.11498862864468747No Hit
CTGGTGATGGCTGCCATGACGCTCGCCCGCGCTGCTACGTGCCT4520.10478802449072325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)