FastQCFastQC Report
Wed 8 May 2024
EGAF00007963105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431347
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26410.6122680811504427No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA17520.4061695108578477No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG15710.36420793467904033No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG14650.3396337519444902No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG12960.300454158716764No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12830.29744034385309276No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12750.295585688552372No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT11500.26660669947861004No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG10330.23948236570556886No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7690.17827874078178357No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC7110.16483248985155805No Hit
GCCGAAGTGCTGGCCCAAGTTGTTAAATCTC6960.1613550111627066No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6900.159964019687166No Hit
GGCACTCGTCACACCCAGAACTCCTCTAGCG6750.15648654099831458No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC6720.1557910452605443No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6610.15324089422205323No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6270.14535860919399No Hit
CCGCTGGATATTGACACCGCGTCTGAATCCG6080.14095380285477815No Hit
GCGCGTGCCGCTCACCCGCCGACTAGCATGC5930.13747632416592676No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA5590.12959403913786346No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5390.12495740088606157No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5390.12495740088606157No Hit
TCTGGTGACGAAGATAGCGACTCCTCCGATG5290.12263908176016061No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4600.10664267979144401No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA4580.1061790159662638No Hit
CCGGGTAGCCACCACGAAGATCGTGCCGGTC4470.10362886492777278No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4380.10154237771446192No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)