FastQCFastQC Report
Wed 8 May 2024
EGAF00007963106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413465
Total Bases18.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC16030.3876990797286348No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC12960.3134485385703748No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG12940.31296482168986495No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11580.280072073815196No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11350.27450932968933284No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG11080.26797915180245No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG8970.21694702090866214No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6900.166882323775894No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6600.1596265705682464No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6440.15575683552416772No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT6330.1530963926813636No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT6330.1530963926813636No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG6280.15188710048008902No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC6250.15116152515932427No Hit
GACTGCAGAGCTCGCCTGACCGTGGCCGGTACCGCTGTGGCGGG6050.1463243563542259No Hit
GTCCAGCAGGTCGCGGTCGTTGTAGACACGTGGGGTATCAGTAT5920.14318019663091192No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5820.14076161222836275No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5770.13955232002708814No Hit
GTCCAGCAGATCGCGATCGTTGTAGACACGCGGGGTGTCGGTGT5330.1289105486558717No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5000.12092922012745941No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG4920.11899435260542006No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG4610.11149674095751755No Hit
CGCACCTGCGCCAGCCGGTACGTTAACACCCGCGCCGAAGGTCA4540.10980373187573314No Hit
CTGGTGATGGCTGCCATGACGCTCGCCCGCGCTGCTACGTGCCT4360.10545027995114459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)