FastQCFastQC Report
Wed 8 May 2024
EGAF00007963107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413465
Total Bases12.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51141.2368640634636547No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA16550.4002757186218906No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG14140.34198783452045517No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG13790.333522789111533No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG12940.31296482168986495No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12090.2924068542681968No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11270.2725744621672935No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT10980.2655605673999008No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8820.21331914430483837No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC6880.16639860689538413No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6730.16277073029156036No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6550.1584172783669718No Hit
GCCGAAGTGCTGGCCCAAGTTGTTAAATCTC6520.15769170304620705No Hit
GGCACTCGTCACACCCAGAACTCCTCTAGCG6380.15430568488263818No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6340.1533382511216185No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6240.15091966671906934No Hit
CCGCTGGATATTGACACCGCGTCTGAATCCG5910.14293833819065702No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5890.14245462131014716No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5800.1402778953478529No Hit
GCGCGTGCCGCTCACCCGCCGACTAGCATGC5250.12697568113383237No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5180.12528267205204793No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5060.12238037076898892No Hit
TCTGGTGACGAAGATAGCGACTCCTCCGATG4700.11367346691981182No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4280.10351541242910524No Hit
CCGGGTAGCCACCACGAAGATCGTGCCGGTC4210.10182240334732082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)