FastQCFastQC Report
Wed 8 May 2024
EGAF00007963109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475949
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30480.6404047492483438No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7220.1516969255109266No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6900.14497351606999911No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6840.1437128767998252No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5880.12354264847704272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)