FastQCFastQC Report
Wed 8 May 2024
EGAF00007963115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460448
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58511.2707189519772046No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6800.14768225727986659No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6530.1418184029466954No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6340.13769198693446383No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5720.12422683994718188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)