FastQCFastQC Report
Wed 8 May 2024
EGAF00007963116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456240
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13400.293705067508329No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12080.2647729265298966No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10980.24066280904786955No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9550.20931965632123442No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8740.19156584253901457No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7390.16197615290198142No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6420.1407154129405576No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5920.12975626863054535No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5690.12471506224793968No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5670.12427669647553918No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5280.11572856391372961No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5140.11266000350692616No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5130.11244082062072593No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5060.11090654041732421No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5020.11002980887252323No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4900.10739961423812028No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4640.1017008591969139No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4570.10016657899351218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)