FastQCFastQC Report
Wed 8 May 2024
EGAF00007963117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456240
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31210.6840697878309662No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27680.6066982290022795No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12730.2790198141329125No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11020.24153954059267052No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10760.23584078555146415No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10250.22466245835525162No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9480.2077853761178327No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7860.17227774855339295No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7180.15737331229177626No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6080.13326319480974927No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5740.12581097667894092No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5680.12449587936173945No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5490.12033140452393477No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5310.11638611257233035No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5230.11463264948272837No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5090.11156408907592495No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5010.10981062598632299No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4870.10674206557951954No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4840.1060845169209188No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4590.10060494476591267No Hit

[OK]Adapter Content

Adapter graph