FastQCFastQC Report
Wed 8 May 2024
EGAF00007963120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458443
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13160.2870585874361698No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12210.26633627299358914No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9750.21267638506859088No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9740.2124582554428795No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8870.19348097800598985No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7420.16185218227784043No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6650.14505620109806452No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5820.12695144216402038No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5720.12477014590690663No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5610.12237072002408152No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5520.12040755339267914No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5430.11844438676127675No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5170.11277301649278101No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5160.11255488686706962No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5070.11059172023566725No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5030.10971920173282175No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4980.10862855360426486No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4700.10252092408434636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)