FastQCFastQC Report
Wed 8 May 2024
EGAF00007963121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458443
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32130.7008504874106486No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28060.612071729746119No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12780.2787696616591376No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10890.23754316239968762No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10140.2211834404713345No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9730.21224012581716808No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9670.21093134806289987No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7740.16883233030060443No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7150.1559626823836333No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6140.1339315901867844No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5970.130223386549691No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5930.1293508680468455No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5590.12193446077265876No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5580.12171633114694738No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5300.11560870162702888No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5240.11429992387276063No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4920.10731977584999661No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4690.10230279445863498No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4680.10208466483292361No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4620.10077588707865537No Hit

[OK]Adapter Content

Adapter graph