FastQCFastQC Report
Wed 8 May 2024
EGAF00007963122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442444
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12720.287494010541447No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11960.27031669544620335No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10010.22624332118867022No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9560.21607254251385485No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8730.19731310629141768No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7630.17245120286409127No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6360.1437470052707235No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5670.12815181130267334No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5390.12182332679389934No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5330.12046722297059063No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5260.11888510184339712No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5100.11526882498124055No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5040.11391272115793186No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4980.11255661733462315No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4920.11120051351131444No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4910.11097449620742965No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4900.11074847890354485No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4670.1055500809141948No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4500.10170778674815345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)