FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007963123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442444
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54791.2383488079847393No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30600.6916129498874434No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12070.272802885788936No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10260.23189375378578986No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10110.22850349422751806No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9900.22375713084593754No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9820.2219489924148593No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8040.18171791232336748No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6750.15256168012223018No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6020.13606241693864082No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5770.13041198434152118No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5410.1222753614016689No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5290.11956315375505149No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5250.11865908453951235No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5020.11346068655016228No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4930.11142653081519921No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4870.1100704269918905No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4870.1100704269918905No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4510.10193380405203822No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4470.10102973483649907No Hit

[OK]Adapter Content

Adapter graph