FastQCFastQC Report
Wed 8 May 2024
EGAF00007963124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476688
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17760.3725707380928406No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13590.28509213573658243No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12390.25991843721679586No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6320.1325814788708757No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5760.12083375289497532No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA4800.1006947940791461No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)