FastQCFastQC Report
Wed 8 May 2024
EGAF00007963125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476688
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60101.2607827341993085No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33650.7059124626590139No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17980.37718591615480146No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6530.13698687611183835No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5800.12167287617896821No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5410.11349142416003759No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA4880.10237304064713186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)