FastQCFastQC Report
Wed 8 May 2024
EGAF00007963126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505229
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19940.3946725148398053No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13920.2755186262071259No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13680.2707683050656237No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6130.12133111915586794No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6030.11935181868024203No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5240.1037153449227974No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5090.10074639420935853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)