FastQCFastQC Report
Wed 8 May 2024
EGAF00007963127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505229
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36070.7139336815582636No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29800.5898315417365195No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19870.39328700450686715No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6360.1258835102498075No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6210.12291455953636866No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5910.11697665810949094No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5350.10589257544598588No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5180.10252776463742184No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)