FastQCFastQC Report
Wed 8 May 2024
EGAF00007963128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484405
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18960.391408016019653No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13920.28736284720430216No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12780.2638288209246395No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6170.12737275626799888No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6100.1259276844788968No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA4940.10198078054520494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)