FastQCFastQC Report
Wed 8 May 2024
EGAF00007963129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484405
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58301.20353836149503No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34590.7140719026434492No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18870.3895500665765217No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6160.1271663174409843No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6090.1257212456518822No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5710.11787657022532799No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5000.10321941350729245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)