FastQCFastQC Report
Wed 8 May 2024
EGAF00007963131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458327
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58431.2748539798004481No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17560.3831325669227429No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13310.29040401285545037No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13280.2897494583561518No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10300.22473037809249727No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7450.1625477006591364No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7300.15927492816264371No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6120.1335291178569013No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5870.1280744970294135No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5810.12676538803081644No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5540.12087439753712961No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5030.10974697104905448No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4840.10560145922016376No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4760.10385598055536768No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4720.10298324122296962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)