FastQCFastQC Report
Wed 8 May 2024
EGAF00007963133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485389
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29090.5993131282332315No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18420.37948944042819266No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14820.30532212308066314No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13310.2742130538598938No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10840.22332603334644993No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8130.16749452500983747No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7800.16069585425298058No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6720.13844565904872175No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6400.13185300861783023No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6210.1279386224244884No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6050.12464229720904264No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5150.10610046787216028No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5100.10507036624233347No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4950.10198006135285306No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)