FastQCFastQC Report
Wed 8 May 2024
EGAF00007963135

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963135
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467692
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57211.2232409363427212No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17370.371398270656757No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13940.29805940661803065No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13590.2905758490630586No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10760.2300659408328558No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7700.16463826620938565No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7210.15416128563242476No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6550.14004943424304883No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6330.13534548377992353No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6070.12978626959623No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5980.12786192622495146No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5260.11246717925472319No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5240.11203954739443908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)