FastQCFastQC Report
Wed 8 May 2024
EGAF00007963137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452424
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39120.8646756140257811No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27890.6164571287111206No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24110.5329071844110834No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC10980.24269269534772692No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10240.22633635704560323No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9740.2152847771117359No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7340.16223719342917262No Hit
ATCCCTCTGGGCATCGACGTAGGTGGCGGTC6100.1348292751931816No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5290.11692571570031651No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG4940.10918960974660938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)