FastQCFastQC Report
Wed 8 May 2024
EGAF00007963138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428448
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15230.35546904175069083No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13540.31602434834565685No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10710.24997199193367692No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9180.21426170737172306No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT9160.21379490626633801No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6700.15637837030398088No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6390.14914295317051313No Hit
ACCCAGCGGGATGGCCGGCAGAGAATAGCCATCCGGAAAAACGG5350.12486929569049218No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG5110.11926768242587198No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4720.11016506087086414No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4440.1036298453954739No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4440.1036298453954739No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)