FastQCFastQC Report
Wed 8 May 2024
EGAF00007963139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428448
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55621.2981738740757338No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35000.8169019344237808No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21860.5102136081858242No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9960.2324669504817387No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC9690.226165135559041No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9060.21146090073941295No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6850.15987937859436852No Hit
ATCCCTCTGGGCATCGACGTAGGTGGCGGTC5460.1274367017701098No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5280.12323549182164464No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4850.11319926805586676No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4430.10339644484278138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)