FastQCFastQC Report
Wed 8 May 2024
EGAF00007963141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455118
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39400.8657095522479884No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28310.6220364828462068No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23950.5262371516837392No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC11460.2518028291563946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9460.20785818183416171No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9420.20697928888771702No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8140.17885471460148797No Hit
ATCCCTCTGGGCATCGACGTAGGTGGCGGTC6690.1469948452928691No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5670.12458307515853032No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4950.10876300212252646No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4940.1085432788859153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)