FastQCFastQC Report
Wed 8 May 2024
EGAF00007963143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435115
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54611.2550704986038175No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36630.8418464084207624No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22130.5086011744021696No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC10670.24522252737781963No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10300.23671902830286248No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9010.20707169369017386No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7070.16248577962147936No Hit
ATCCCTCTGGGCATCGACGTAGGTGGCGGTC5950.1367454580972846No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5190.11927881134872391No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5020.11537179826023006No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4700.1080174206818887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)