FastQCFastQC Report
Wed 8 May 2024
EGAF00007963144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457041
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG17110.37436466312650285No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12990.2842195776746506No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11130.24352300997065907No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10420.22798829864279133No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8280.1811653659080914No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7230.1581914970429349No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7230.1581914970429349No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7110.15556591202977416No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6940.15184633326112976No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6640.1452823707282279No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6620.14484477322603442No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT6270.13718681693764892No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6140.13434243317339145No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5130.11224375931262184No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4920.10764898553959056No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT4870.1065549917841069No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4820.10546099802862326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)