FastQCFastQC Report
Wed 8 May 2024
EGAF00007963147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432284
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57291.3252861544725225No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24440.565369062930851No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG16010.37035837551239464No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12520.2896244135799613No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8090.1871454876886491No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7400.17118375882521675No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7120.16470653551831665No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6800.15730399459614514No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6430.1487448066548843No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6390.14781948903961284No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6240.14434954798234492No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6000.13879764229071628No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5670.1311637719647269No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5230.12098527819674103No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5220.12075394879292316No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4940.11427672548602308No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4930.11404539608220522No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC4390.10155360827604075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)