FastQCFastQC Report
Wed 8 May 2024
EGAF00007963149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460228
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29130.6329471479353712No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26630.5786262461214876No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG17420.3785080438391406No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13880.30158964687068146No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8850.19229599242114778No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7760.16861207923029453No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7140.15514049558045143No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7050.15318494311515163No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6920.15036025622082969No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6810.1479701365410188No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6800.14775285293376325No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6630.1440590316104192No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5980.12993559713880945No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5650.12276523809937682No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5610.12189610367035468No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5290.1149430282381776No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC5050.10972822166404478No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5040.10951093805678924No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4860.10559983312618962No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4840.10516526591167856No Hit

[OK]Adapter Content

Adapter graph