FastQCFastQC Report
Wed 8 May 2024
EGAF00007963160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499221
Total Bases21.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10750.2153354926976229No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8020.1606502931567382No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7920.15864717229443473No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7340.1470290712930746No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7150.14322314165469802No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6420.1286003593598827No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6320.12659723849757923No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5870.11758319461721362No Hit
ACCGCCGAAGTTGCCAGAACCGGAACGACCACGCTGGCTAGAGG5860.11738288253098327No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5800.1161810100136012No Hit
GTTGTTGCCCGCGGTTTCGCTGTGGTTCTGCGGAGAAGTCGTGG5760.1153797616686798No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5600.11217476828899425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)