FastQCFastQC Report
Wed 8 May 2024
EGAF00007963161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499221
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31540.6317843199705141No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11800.23636826175180933No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9980.19991146205788618No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9850.1973074049368917No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8230.1648568469675755No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8060.16145154150165958No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7670.15363937013867607No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6920.13861596367140003No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6870.1376144032402483No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6290.1259963022388882No Hit
GTAACCTTCGACGATCACGATTCTGTGGACA6220.12459411763527577No Hit
CGTCGCACTGACAACGATAGCACTGCCTCCG6110.12239068468674194No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6100.12219037260051159No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5830.11678194627229223No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5490.10997133534046044No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5380.10776790239192663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)