FastQCFastQC Report
Wed 8 May 2024
EGAF00007963162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472771
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9970.21088433935245607No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7690.16265803105520432No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7660.1620234743670826No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6270.13262234781744225No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6140.12987260216891477No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5490.11612387392627721No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5440.11506627944607431No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5410.11443172275795259No Hit
GTTGTTGCCCGCGGTTTCGCTGTGGTTCTGCGGAGAAGTCGTGG5310.11231653379754682No Hit
ACCGCCGAAGTTGCCAGAACCGGAACGACCACGCTGGCTAGAGG5230.11062438262922217No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5170.10935526925297873No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT4920.10406729685196427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)