FastQCFastQC Report
Wed 8 May 2024
EGAF00007963163

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963163
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472771
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62861.329607780511072No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10900.2305555966842298No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8980.18994396864443885No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8800.18613662851570845No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7520.15906220982251448No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6590.13939095249074074No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6520.1379103202184567No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6390.13516057456992922No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6070.12839196989663074No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5910.12500766755998147No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5660.11971969515896703No Hit
CGTCGCACTGACAACGATAGCACTGCCTCCG5630.1190851384708453No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5520.11675843061439894No Hit
GTAACCTTCGACGATCACGATTCTGTGGACA5340.11295109048566855No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4920.10406729685196427No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4810.10174058899551791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)