FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007963164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502292
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10190.20287004371958942No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8590.17101606237009548No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8320.16564070301736838No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6950.1383657314868642No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6420.12781410016484435No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6240.1242305272630263No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6200.12343417772928894No Hit
ACCGCCGAAGTTGCCAGAACCGGAACGACCACGCTGGCTAGAGG5830.11606794454221847No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5750.11447524547474378No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5690.11328072117413775No Hit
GTTGTTGCCCGCGGTTTCGCTGTGGTTCTGCGGAGAAGTCGTGG5610.11168802210666305No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5410.10770627443797631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)