FastQCFastQC Report
Wed 8 May 2024
EGAF00007963165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502292
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29580.5889004801987688No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11310.22516783066423512No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9920.19749468436686232No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9760.1943092862319129No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8370.16663613993454007No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7250.1443383529898943No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7220.1437410908395913No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6920.1377684693365612No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6600.13139767306666242No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6530.13000406138262208No Hit
GTAACCTTCGACGATCACGATTCTGTGGACA6210.12363326511272328No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5980.11905425529373352No Hit
CGTCGCACTGACAACGATAGCACTGCCTCCG5760.11467433285817812No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5670.11288254640726908No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5580.11109075995636006No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5490.10929897350545101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)