FastQCFastQC Report
Wed 8 May 2024
EGAF00007963166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480645
Total Bases21.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10080.20971819118060106No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8600.17892623453900489No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7820.16269804117383932No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6890.14334904139229576No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6690.13918796617045845No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6180.12857722435477326No Hit
ACCGCCGAAGTTGCCAGAACCGGAACGACCACGCTGGCTAGAGG6110.12712084802713022No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5700.11859064382236371No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5520.1148456761227101No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5470.11380540731725079No Hit
GTTGTTGCCCGCGGTTTCGCTGTGGTTCTGCGGAGAAGTCGTGG5060.10527520311248426No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5040.10485909559030053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)