FastQCFastQC Report
Wed 8 May 2024
EGAF00007963167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480645
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60711.2630943835887194No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11110.2311477285730633No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9810.2041007396311207No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9260.19265778277106804No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7770.16165777236838No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7530.1566644821021752No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6960.14480541771993882No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6690.13918796617045845No Hit
GTAACCTTCGACGATCACGATTCTGTGGACA6260.13024165444350821No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5990.12462420289402781No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5890.12254366528310916No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5740.11942285886673117No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5410.11255708475069957No Hit
CGTCGCACTGACAACGATAGCACTGCCTCCG5270.10964433209541345No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5030.10465104182920866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)