FastQCFastQC Report
Wed 8 May 2024
EGAF00007963169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492426
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30270.6147116521061032No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28900.5868902129457015No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28300.5747056410506349No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG21280.43214614987835737No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC19160.3890939958491225No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG18100.36756791883450507No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18020.3659433092484962No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17810.361678709085223No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG17720.35985102330096297No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17410.35355566115517867No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16690.3389341748810989No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC16400.33304496513181675No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG15960.324109612408768No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15030.305223525971415No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14130.2869466681288153No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG13970.28369744895679755No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13940.28308822036204423No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12480.2534390954173825No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12410.2520175620296247No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11640.23638069476428947No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC11220.22785149443774294No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC10820.21972844650769863No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10570.21465154155142094No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10070.20449773163886553No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG10030.2036854268458611No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9860.20023313147559227No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9660.1961716075105701No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG9530.19353161693330573No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9120.1852054928050103No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG8610.1748486066942038No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8470.17200553991868828No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7980.162054806204384No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG7790.15819635843761296No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7700.156368672653353No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7160.14540255794779317No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6990.14195026257752436No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6970.14154411018102211No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6780.13768566241425106No Hit
GACGGTCCGTACGCACCGTTCCCGCCTCGCC6420.1303749192772112No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6340.12875030969120232No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6080.12347032853667352No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5990.12164264275241354No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5400.1096611470555982No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5350.10864576606434266No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5070.10295963251331164No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5020.1019442515220561No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC4990.10133502292730277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)