FastQCFastQC Report
Wed 8 May 2024
EGAF00007963170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465504
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26000.5585344057193923No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20290.4358716573864027No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG18810.40407816044545264No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16100.3458616896954699No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG15600.3351206434316354No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG15430.33146868770193166No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15220.3269574482711212No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15130.325024059943631No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14110.3031123255654087No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG13620.2925861002268509No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG13370.2872155770949336No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12850.2760448889805458No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG12740.27368185880250223No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12590.2704595449233519No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11940.25649618478036706No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG11290.2425328246373823No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10650.22878428541967416No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10460.22470268783941708No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10380.22298412043720356No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG10270.22062109025915996No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG9220.19806489310510758No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9010.1935536536742971No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG8720.1873238468412731No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8080.173575307623565No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7870.16906406819275452No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7710.16562693338832749No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG7700.16541211246305082No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7660.16455282876194405No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7370.15832302192892003No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7010.15058946861895925No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6710.14414484086065854No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6590.14156698975733828No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6480.13920395957929468No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6400.1374853921770812No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6340.13619646662542104No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5570.11965525537911596No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5480.11772186705162575No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5440.11686258335051902No Hit
TTCCGGCGCGGAGGTCGGAGAATCGGAGCTGGTGTCTTCGGTCA5410.11621812057468893No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5330.11449955317247543No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4980.10698082078779131No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT4980.10698082078779131No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4900.10526225338557778No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4750.10203993950642744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)