FastQCFastQC Report
Wed 8 May 2024
EGAF00007963172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496739
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27920.5620657931026152No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22650.45597386152486513No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG20360.4098731929645146No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17600.35431081513631907No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG16960.3414267854949984No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG16910.3404202206792702No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16820.3386084040109595No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15840.3188797336226872No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15300.30800883361282283No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG14690.29572874286093903No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG14590.2937156132294827No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG14540.2927090484137545No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG13760.2770066372883949No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13420.2701619965414433No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12430.25023201319002536No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12120.24399131133251065No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG11590.23332172428579193No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11340.22828890020715104No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG11180.22506789279682088No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11070.2228534502022189No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10120.20372871870338347No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG9680.1948709483249755No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG9470.19064337609891713No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8850.17816197238388773No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG8750.17614884275243137No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8690.17494096497355754No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8010.16125168347965432No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG7860.15823198903246977No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7460.15017947050664432No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7340.1477637149488967No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7230.1455492723542947No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6950.1399125093862169No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6870.13830200568105183No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6690.13467837234443036No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6630.13347049456555654No Hit
TTCCGGCGCGGAGGTCGGAGAATCGGAGCTGGTGTCTTCGGTCA6600.13286655567611966No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5910.11897596121907077No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5800.11676151862446879No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5750.11575495380874061No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5610.1129365723247017No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5580.1123326334352648No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5560.11193000750897351No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5310.10689718343033262No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5190.10448142787258499No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5030.10126042046225484No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4980.10025385564652665No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)