FastQCFastQC Report
Wed 8 May 2024
EGAF00007963176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456270
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19380.42474850417515947No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15620.3423411576478839No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14390.3153834352466741No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13670.29960330506060007No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13460.29500076708966183No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13240.29017906064391696No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12930.2833848379249129No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11460.25116707212834505No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10800.2367019527911105No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8770.192210752405374No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8460.1854165296863699No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7640.16744471475223005No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7250.15889714423477327No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6610.1448703618471519No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6550.1435553509983124No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6400.14026782387621364No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5900.12930940013588446No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5740.12580270453897913No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5530.12120016656804085No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5450.11944681876958818No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5190.113748438424617No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5070.11111841672693801No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4900.10739255265522607No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4790.10498169943235365No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4620.10125583536064174No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4570.10015999298660881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)