FastQCFastQC Report
Wed 8 May 2024
EGAF00007963177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456270
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36030.7896640147281215No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28570.62616433252241No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24430.5354285839524843No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16090.3526420759637934No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14410.31582177219628726No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14380.31516426677186754No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14060.30815087557805687No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11940.2616871589190611No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10820.2371402897407237No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9360.20514169241896246No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9290.20360751309531638No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8670.1900190676573082No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8070.17686895916891315No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7620.16700637780261687No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7240.15867797575996667No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6650.14574703574637823No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6140.13456944353124248No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5890.12909023166107786No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5450.11944681876958818No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5420.11878931334516843No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5390.11813180792074868No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5390.11813180792074868No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5360.11747430249632893No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5350.11725513402152234No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5300.11615929164748942No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5080.11133758520174457No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5070.11111841672693801No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5040.11046091130251824No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4830.10585837333157999No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4800.10520086790716024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)