FastQCFastQC Report
Wed 8 May 2024
EGAF00007963179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429530
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57441.33727562684795No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36350.8462738341908598No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23320.5429190044932833No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15130.35224547761506764No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13590.3163923358089074No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12670.2949735757688636No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12550.29217982445929275No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11670.2716923148557726No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9720.22629385607524505No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8740.20347822038041583No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8490.19765790515214304No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8090.18834540078690662No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7540.17554070728470655No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7070.16459851465555375No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6180.1438781924429027No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6070.1413172537424627No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5570.12967662328591717No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5510.1282797476311317No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5400.12571880893069168No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5380.12525318371242986No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5310.12362349544851349No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5280.12292505762112076No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5120.11920005587502619No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5120.11920005587502619No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4940.1150094289106698No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4840.11268130281936069No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4830.11244849021022979No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4460.1038344236723861No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4430.10313598584499337No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4400.10243754801760063No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4390.10220473540846972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)