FastQCFastQC Report
Wed 8 May 2024
EGAF00007963180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458762
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20220.44075141358700154No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15850.3454950497207703No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14880.32435118863375784No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14260.3108365557740179No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13950.30407923934414793No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13200.28773089314284966No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12590.27443423823246044No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12120.26418927461298014No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10550.22996673656492908No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8290.1807037200116836No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8230.17939585231557975No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7710.16806099894934629No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7680.16740706510129436No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6720.14648118196363255No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6440.14037779938181452No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6210.13536430654674975No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5800.12642721062337334No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5730.12490136497791883No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5680.12381147523116562No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5450.11879798239610082No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5310.11574629110519181No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5230.11400246751038666No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5130.11182268801688021No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5100.1111687541688283No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4980.10855301877662055No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4840.10550132748571155No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4830.1052833495363609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)