FastQCFastQC Report
Wed 8 May 2024
EGAF00007963181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458762
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38210.8328937444688095No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28070.6118641038272569No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26630.5804752791207641No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16030.34941865280908185No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14630.3189017398999917No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14370.313234313216875No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14160.30865677628051147No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12640.27552412797921366No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10660.23236449400778617No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8960.19530824261817675No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8890.19378239697272223No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8890.19378239697272223No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8690.18942283798570936No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8380.18266552155583943No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6870.14975085120389223No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6440.14037779938181452No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6070.1323126152558407No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5990.13056879166103558No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5960.12991485781298362No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5940.12947890191428235No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5580.12163169573765917No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5540.1207597839402566No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5530.12054180599090597No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5400.11770809264934759No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5330.11618224700389308No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5270.11487437930778922No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5120.11160471006752958No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4940.10768110697921798No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4720.10288559209350383No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4660.10157772439739997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)