FastQCFastQC Report
Wed 8 May 2024
EGAF00007963183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436977
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55871.2785569949905828No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35350.8089670623396654No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24120.5519741313616049No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14850.3398348196815851No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14120.32312913494302903No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13290.3041350002402873No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12800.29292159541577706No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11420.2613409859100136No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10310.23593919130755164No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8890.2034432018161139No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8450.19337402197369655No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7980.18261830714202348No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7750.17735487222439625No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7680.1757529572494662No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6350.14531657272579562No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6250.14302812276160987No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6110.13982429281174982No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6000.13730699785114547No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5740.13135702794426252No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5570.12746666300514672No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5280.12083015810900803No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5030.11510903319854364No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4990.11419365321286931No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4960.1135071182236136No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4930.11282058323435788No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4850.11098982326300927No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4830.11053213327017213No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4710.1077859933131492No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4650.10641292333463774No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4590.1050398533561263No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4520.10343793838119626No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4510.1032090933847777No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4430.10137833341342908No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4410.10092064342059194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)