FastQCFastQC Report
Wed 8 May 2024
EGAF00007963187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463113
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58951.272907476145131No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7650.1651864663699788No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5990.1293420828178004No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5480.11832965172646848No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5000.10796501069933256No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4880.10537385044254857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)