FastQCFastQC Report
Wed 8 May 2024
EGAF00007963189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492830
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29930.6073088083111824No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7590.15400848162652436No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7000.142036807824199No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5580.11322362680843293No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5360.10875961284824381No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4990.10125195300610759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)